SubtiBank SubtiBank
yhdV [2018-02-11T11:45:35.000Z]
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yhdV [2018-02-11T11:45:35.000Z]

similar to flouride channel
locus
BSU09610
pI
10.36
mw
13.77 kDa
protein length
131 aa Sequence Blast
gene length
393 bp Sequence Blast
function
export of flouride
product
putative flouride channel
essential
no
synonyms
crcBB

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.11|Other exporters]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.10|Resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • Gene

    Coordinates
    1,037,306 → 1,037,701

    The protein

    Protein family

  • crcB family (according to Swiss-Prot)
  • Paralogous protein(s)

  • [protein|2F86A2FF36ED00DB0A9A91B064EBD095F5E759ED|FluC]
  • Structure

  • [PDB|6B2A] (from E. coli, 35% identity, aa 6 ... 115) [pubmed|28952925]
  • [SW|Localization]

  • cell membrane (according to Swiss-Prot)
  • Expression and Regulation

    Operons

    genes
    [gene|04CACAF4F786090AB67D7C606C944F07B7A7FE55|yhdW]-[gene|BD1C4D9E6E8960DF77EE1571A637929C2D8C4A28|yhdV]-[gene|2F86A2FF36ED00DB0A9A91B064EBD095F5E759ED|fluC]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-A699 (yhdV::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/699 NBRP B. subtilis, Japan]
  • BKE09610 (Δ[gene|BD1C4D9E6E8960DF77EE1571A637929C2D8C4A28|yhdV]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09610 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AAGCGCGCCTCCGATAAAAA, downstream forward: _UP4_CAAAGAAAGGGGCTGCAGGA
  • BKK09610 (Δ[gene|BD1C4D9E6E8960DF77EE1571A637929C2D8C4A28|yhdV]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09610 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AAGCGCGCCTCCGATAAAAA, downstream forward: _UP4_CAAAGAAAGGGGCTGCAGGA
  • References

    Reviews

  • 28514705
  • Research papers

  • 28952925,23991286